PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009625395.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 330aa    MW: 38214.9 Da    PI: 8.7817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009625395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.72.7e-50351702128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      pGfrFhPtdeelv++yLk+kve+kk+++ + ikevdiyk++PwdLpk  +v  + kewyfFs r +ky+++ r+nr+t sg+Wkatg dk+++s
  XP_009625395.1  35 LPGFRFHPTDEELVSFYLKRKVENKKIKI-DLIKEVDIYKHDPWDLPKgnTVGDNCKEWYFFSMRGRKYRNSVRPNRVTGSGFWKATGIDKPIYS 128
                     59***************************.99***************5335555667************************************** PP

             NAM  95 k........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +        ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  XP_009625395.1 129 SttttsqstDRECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 170
                     9776655544445***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5232201IPR003441NAC domain
PROSITE profilePS5100551.48334202IPR003441NAC domain
PfamPF023651.7E-2536170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSEKRAEKIE NMELVENISA NTNIKAEDEE EMMQLPGFRF HPTDEELVSF YLKRKVENKK  60
IKIDLIKEVD IYKHDPWDLP KGNTVGDNCK EWYFFSMRGR KYRNSVRPNR VTGSGFWKAT  120
GIDKPIYSST TTTSQSTDRE CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PPNWKTSNQQ  180
LPNPKNIIPE AEVWTLCRIF KRTSNYKRFT PDWKQPVIKQ SFGDASSKAC SLQSETSDDH  240
SININFNKME FPHKKNNTAT GGNYQVDQKT THYQNSQPII TMPQSSITSS NSSFWNTSAE  300
EEYLFSDGNW DELKSVVDLA IDPRSLFGFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-48212081171NO APICAL MERISTEM PROTEIN
1ut4_B1e-48212081171NO APICAL MERISTEM PROTEIN
1ut7_A1e-48212081171NO APICAL MERISTEM PROTEIN
1ut7_B1e-48212081171NO APICAL MERISTEM PROTEIN
4dul_A1e-48212081171NAC domain-containing protein 19
4dul_B1e-48212081171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754463e-49HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625395.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK557e-91NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLK4CER11e-168K4CER1_SOLLC; Uncharacterized protein
STRINGSolyc07g045030.2.11e-167(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-86NAC domain containing protein 42